Pallab Bhowmick

Experience

Publications & Posters

• Bhowmick, P., Roome S, Borchers CH, Goodlett DR, and Mohammed Y. An Update on MRMAssayDB: A Comprehensive Resource for Targeted Proteomics Assays in the Community. J Proteome Res, 2021.
• Mohammed, Y., Bhowmick, P., Michaud, S. A., Sickmann, A. and Borchers, C. H. Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays. Bioinformatics, 2021.
• Bhowmick, P., Mohammed, Y., and Borchers, C. H. MRMAssayDB: an integrated resource for validated targeted proteomics assays. Bioinformatics, 2018.
• Mohammed, Y., Bhowmick, P., Smith, D. S., Domanski, D., Jackson, A. M., Michaud, S. A., Malchow, S., Percy, A. J., Chambers, A. G., Palmer, A., Zhang, S., Sickmann, A. and Borchers, C. H. (2016), PeptideTracker: A knowledgebase for collecting and storing information on protein concentrations in biological tissues. Proteomics, 2016.
• Guharoy, M., Bhowmick, P., and Tompa, P. (2016). Design principles involving protein disorder facilitate specific substrate selection and degradation by the ubiquitin- proteasome system. JBC.
• Guharoy, M*., Bhowmick, P*., Sallam, M ., and Tompa, P. (2016). Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system .Nature Communications 7, 10239 (* Contributed equally)
• Bhowmick, P., Guharoy, M., and Tompa, P. (2015). Bioinformatics approaches for predicting disordered protein motifs. Adv Exp Med Biol, 870, 291-318.
• Bhowmick, P., Pancsa, R., Guharoy, M., and Tompa, P. (2013). Functional diversity and structural disorder in the human ubiquitination pathway. PloS one 8, e65443.
• Jayaram, N., Bhowmick, P., and Martin, A.C. (2012). Germline VH/VL pairing in antibodies. Protein engineering, design & selection : PEDS 25, 523-529.

Posters

• Mohammed, Y., Bhowmick, P., Michaud, S. A., Petrosova, H., S. and Borchers, C. H. (2019, June). The Mouse Quantitative Proteomics Knowledge Base: CPTAC-validated quantitative targeted proteomics assays for discovery in mouse models. Poster session presented at the American Society for Mass Spectrometry, Atlanta, Georgia, USA.
• Bhowmick, P., Mohammed, Y., and Borchers, C. H. (2018, June). MRMAssayDB: an integrated resource for validated targeted proteomics assays. Poster session presented at the American Society for Mass Spectrometry, San Diego, California, USA.
• Bhowmick, P., Mohammed, Y., and Borchers, C. H. (2017, June).PeptideMapper: an integrated resource for targeted proteomics. Poster session presented at the American Society for Mass Spectrometry, Indianapolis, Indiana, USA.
• Bhowmick, P., Guharoy, M., and Tompa, P. ( December, 2013). Identifying Degrons: How Are Proteins Targeted For Degradation By The Ubiquitin Proteasome System?. Poster session at BeNeLux Bioinformatics Conference, Brussels, Belgium.
• Bhowmick, P., Pancsa, R., Guharoy, M., and Tompa, P. (November, 2012).Functional diversity and structural disorder in the human ubiquitination pathway. Poster session presented at FEBS special meeting on "Protein Quality Control and Ubiquitin Systems in Health and Disease", Kusadasi (Aydin), Turkey.

Softwares

• PeptideTracker
• MRMAssayDB
• Qualis-CPTAC
• MouseQuaPro